• Compusyn Data Entry

Repbase Submitter 1.1.115:: DESCRIPTIONis a java-based interface for formatting and annotating Repbase entries. It eliminates many common formatting errors, and automates actions such as calculation of sequence lengths and composition, thus facilitating curation of Repbase sequences. In addition, it has several features for predicting protein coding regions in sequences; searching and including Pubmed references in Repbase entries; and searching the NCBI taxonomy database for correct inclusion of species information and taxonomic position.:: DEVELOPER:: SCREENSHOTS:: REQUIREMENTS. Linux / Windows / MacOsX.:: DOWNLOAD:: MORE INFORMATIONCitation:Kohany O, Gentles AJ, Hankus L, Jurka JBMC Bioinformatics, 2006 Oct 25;7:474. DASS-GUI 1.4:: DESCRIPTIONis a stand-alone program written in C that calculates all significant closed sets. of a given dataset containing the host sets. Some of the used algorithms are taken from Hollunder et al.

DASS-GUI also allows additional analyses of the identified closed sets: filtering, handling of synonymous names, enrichment analyses, calculation of means and standard deviations of different numerical features, extraction of the underlying closed set hierarchy and corresponding export as GML file, as well as comparison (validation) with pre-defined sets.::DEVELOPERand:: SCREENSHOTS:: REQUIREMENTS. Linux/windows/MacOsX.:: DOWNLOAD:: MORE INFORMATIONCitation:Hollunder, J.,. Friedel, M., Kuiper, M., Wilhelm, T. (2010)Bioinformatics 26(7), 987-9. DiscoverySpace 4.0:: DESCRIPTIONis a graphical software application that intends to free the biologist from the micro-level, syntactic detail of the underlying data structures to concentrate on the “big picture” and the meaning of experimental results. Originally designed to support SAGE gene expression analysis, DiscoverySpace is particularly aimed at the non-technical biologist who wishes to utilize high-thoughput bioinformatic techniques without the learning curve associated with scripting languages and database queries.::DEVELOPER:: SCREENSHOTS:: REQUIREMENTS. Windows / Mac / Linux.:: DOWNLOAD:: MORE INFORMATIONCitationNeil Robertson, Mehrdad Oveisi-Fordorei, Scott D Zuyderduyn, Richard J Varhol, Christopher Fjell, Marco Marra, Steven Jones and Asim Siddiqui,Genome Biol, 2007 Jan 8;8(1):R6.

HMMlib 1.0.2:: DESCRIPTIONis a C library for constructing and analyzing general hidden Markov models. The library consists of a number of template classes and generic functions, parameterized with the precision of floating point types and different types of hardware acceleration.::DEVELOPER.:: SCREENSHOTSN/A:: REQUIREMENTS.

Compusyn Data Entry

Linux.:: DOWNLOAD:: MORE INFORMATIONCitationSand, A.; Pedersen, C.N.S.; Mailund, T.; Brask, A.T.;Parallel and Distributed Methods in Verification, 2010 Ninth International Workshop on, and High Performance Computational Systems Biology, Second International Workshop on.